Installation¶

System requirements¶

R >= 4.0.0 (current)
Rstudio (recommended)

Install from Bioconductor¶

sangeranalyseR is on Bioconductor 3.12 development now.

Figure 1. sangeranalyseR on Bioconductor 3.12 development.

To install this package, start R (version “4.0”) and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sangeranalyseR")

Install the development version¶

If you haven’t installed the devtools package before, please install it first:

install.packages("devtools")

Then run the following code in your R console to install the newest version from Github.

library(devtools)

## Install the release version
install_github("roblanf/sangeranalyseR", ref = "master")

## Install the development version
install_github("roblanf/sangeranalyseR", ref = "develop")
library(sangeranalyseR)

After installing sangeranalyseR, load it in R console.

library(sangeranalyseR)

Now, you are ready to go !

Where to go from here ?¶

Please continue to the Quick Start Guide or the more detailed Beginners Guide.